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1

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

Katajamaa, M., Miettinen, J., Oresic, M.

Journal:

Year:

2006

Language:

english

File:

PDF, 238 KB

english, 2006

2

Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells

Rischer, H., Oresic, M., Seppanen-Laakso, T., Katajamaa, M., Lammertyn, F., Ardiles-Diaz, W., Van Montagu, M. C. E., Inze, D., Oksman-Caldentey, K.-M., Goossens, A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 766 KB

english, 2006

3

Data processing for mass spectrometry-based metabolomics

Mikko Katajamaa, Matej Orešič

Journal:

Journal of Chromatography A

Year:

2007

Language:

english

File:

PDF, 624 KB

english, 2007

4

A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments

Robert Moulder, Jan-Jonas Filén, Jussi Salmi, Mikko Katajamaa, Olli S. Nevalainen, Matej Oresic, Tero Aittokallio, Riitta Lahesmaa, Tuula A. Nyman

Journal:

Year:

2005

Language:

english

File:

PDF, 311 KB

english, 2005

5

A human ImmunoChip cDNA microarray provides a comprehensive tool to study immune responses

T. Nikula, A. West, M. Katajamaa, T. Lönnberg, R. Sara, T. Aittokallio, O.S. Nevalainen, R. Lahesmaa

Journal:

Journal of Immunological Methods

Year:

2005

Language:

english

File:

PDF, 937 KB

english, 2005

6

Processing methods for differential analysis of LC/MS profile data

Mikko Katajamaa, Matej Orešič

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.43 MB

english, 2005

7

Normalization method for metabolomics data using optimal selection of multiple internal standards

Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Orešič

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.13 MB

english, 2007

8

Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis

Laxman Yetukuri, Mikko Katajamaa, Gema Medina-Gomez, Tuulikki Seppänen-Laakso, Antonio Vidal-Puig, Matej Orešič

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 1.42 MB

english, 2007

9

DNA Microarray-Based Gene Expression Profiles of Cytomegalovirus Infection and Acute Rejection in Liver Transplants

K. Inkinen, R. Lahesmaa, A. Brandt, M. Katajamaa, L. Halme, K. Höckerstedt, I. Lautenschlager

Journal:

Transplantation Proceedings

Year:

2005

Language:

english

File:

PDF, 55 KB

english, 2005

10

Improving Identification of Differentially Expressed Genes by Integrative Analysis of Affymetrix and Illumina Arrays

Elo, Laura L., Katajamaa, Mikko, Lund, Riikka, OrešIč, Matej, Lahesmaa, Riitta, Aittokallio, Tero

Journal:

Omics A Journal of Integrative Biology

Year:

2006

Language:

english

File:

PDF, 928 KB

english, 2006

11

Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes

Oresic, M., Simell, S., Sysi-Aho, M., Nanto-Salonen, K., Seppanen-Laakso, T., Parikka, V., Katajamaa, M., Hekkala, A., Mattila, I., Keskinen, P., Yetukuri, L., Reinikainen, A., Lahde, J., Suortti, T.,

Journal:

Journal of Experimental Medicine

Year:

2008

Language:

english

File:

PDF, 3.75 MB

english, 2008

12

Quantitative Proteomics Reveals GIMAP Family Proteins 1 and 4 to Be Differentially Regulated during Human T Helper Cell Differentiation

Filen, J.-J., Filen, S., Moulder, R., Tuomela, S., Ahlfors, H., West, A., Kouvonen, P., Kantola, S., Bjorkman, M., Katajamaa, M., Rasool, O., Nyman, T. A., Lahesmaa, R.

Journal:

Molecular & Cellular Proteomics

Year:

2009

Language:

english

File:

PDF, 659 KB

english, 2009

13

A Systems Biology Strategy Reveals Biological Pathways and Plasma Biomarker Candidates for Potentially Toxic Statin-Induced Changes in Muscle

Laaksonen, Reijo, Katajamaa, Mikko, Päivä, Hannu, Sysi-Aho, Marko, Saarinen, Lilli, Junni, Päivi, Lütjohann, Dieter, Smet, Joél, Van Coster, Rudy, Seppänen-Laakso, Tuulikki, Lehtimäki, Terho, Soini, J

Journal:

Year:

2006

Language:

english

File:

PDF, 246 KB

english, 2006

14

Is domestication driven by reduced fear of humans? Boldness, metabolism and serotonin levels in divergently selected red junglefowl ( Gallus gallus )

Agnvall, Beatrix, Katajamaa, Rebecca, Altimiras, Jordi, Jensen, Per

Journal:

Biology Letters

Year:

2015

Language:

english

File:

PDF, 258 KB

english, 2015

15

DNA MICROARRAY-BASED GENE EXPRESSION PROFILES OF CYTOMEGALOVIRUS INFECTION AND ACUTE REJECTION IN LIVER TRANSPLANTS

Inkinen, K, Lahesmaa, R, Brandt, A, Katajamaa, M, Halme, L, Höckerstedt, K, Lautenschlager, I

Journal:

Transplantation Journal

Year:

2004

Language:

english

File:

PDF, 442 KB

english, 2004

16

Is evolution of domestication driven by tameness? A selective review with focus on chickens

Agnvall, Beatrix, Bélteky, Johan, Katajamaa, Rebecca, Jensen, Per

Journal:

Applied Animal Behaviour Science

Year:

2017

Language:

english

File:

PDF, 381 KB

english, 2017

17

Proteomic-Based Detection of a Protein Cluster Dysregulated during Cardiovascular Development Identifies Biomarkers of Congenital Heart Defects

Nath, Anjali K., Krauthammer, Michael, Li, Puyao, Davidov, Eugene, Butler, Lucas C., Copel, Joshua, Katajamaa, Mikko, Oresic, Matej, Buhimschi, Irina, Buhimschi, Catalin, Snyder, Michael, Madri, Josep

Journal:

Year:

2009

Language:

english

File:

PDF, 819 KB

english, 2009

18

Activity, social and sexual behaviour in Red Junglefowl selected for divergent levels of fear of humans

Katajamaa, Rebecca, Larsson, Lovisa H., Lundberg, Paulina, Sörensen, Ida, Jensen, Per, Rosenfeld, Cheryl S.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.35 MB

english, 2018

19

Tameness correlates with domestication related traits in a Red Junglefowl intercross

Katajamaa, Rebecca, Jensen, Per

Journal:

Genes, Brain and Behavior

Year:

2020

File:

PDF, 998 KB

2020

20

Selection for reduced fear in red junglefowl changes brain composition and affects fear memory

Katajamaa, Rebecca, Jensen, Per

Journal:

Royal Society Open Science

Year:

2020

File:

PDF, 671 KB

2020